MolScript

MolScript v1.4

1993

• Overview
• Copyright, distribution and license
• Introduction
  • Version history
  • Changes from previous versions
  • Version development policy
  • Installing the program
  • Program dimensions
  • Program invokation
  • Command line options
• How to use MolScript
  • A minimal input file
  • Example files
• Input file syntax description
• Input stream files
• Macros
• Commands
  • One input file - one paper - several plots
    • Encapsulated PostScript
    • Raster3D
  • Plot header
    • noframe
    • area
    • background
    • window
    • slab
  • Stereo plots
  • Reading coordinates
  • The coordinate system
  • Transforming coordinates
  • Copying atoms into a new molecule
  • Deleting a molecule
  • Selection mechanism
    • Atom selections
    • Residue selections
  • Name comparison
  • Graphics commands
    • ball-and-stick
    • coil
    • cpk
    • helix
    • label
    • line
    • strand
    • trace
    • turn
  • The graphics state
    • atomcolour
    • Atom radius
    • bonddistance
    • coilradius
    • colourdepthcue
    • depthcue
    • helixthickness
    • helixwidth
    • labelcentre
    • labelclip
    • labelmask
    • labeloffset
    • labelrotation
    • labelsize
    • linecolour
    • linedash
    • linewidth
    • planecolour
    • plane2colour
    • segments
    • shading
    • shadingexponent
    • smoothsteps
    • splinefactor
    • stickradius
    • sticktaper
    • strandthickness
    • strandwidth
  • Colour specification
  • Vector specifications
• Common problems
  • weird helices or strands
  • difficulty to position label strings
  • coils/turns not connected to helices/strands
  • coil radius is not depth-cued
• Syntax specification
• Known bugs
• About the program
• Acknowledgements
• References
• About this document

This document was generated on 14 June 1995 using the texi2html translator version 1.37.