Profiles-3D

A       References

Bernstein, F. C.; Koetzle, T. F.; Williams, G. J. B.; Meyer, Jr., E. F.; Brice, M. D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; and Tasumi, M. "The Protein Data Bank: A Computer-based Archival File for Macromolecular Structures", J Mol Biol, 112 535-542 (1977).

Bowie, J. U.; Lüthy, R; Eisenberg, D. "A method to identify protein sequences that fold into a known three-dimensional structure", Science 253 164-170 (1991).

Eisenberg, D.; Wesson, M.; Yamashita, M. "Interpretation of protein folding and binding with atomic solvation parameters", Chem Scr 29A 217-221 (1989).

Fano, R. Transmission of information, Wiley: New York (1961).

Gribskov, M.; McLachlan, A. D.; Eisenberg, D. "Profile analysis: Detection of distantly related proteins", Proc Natl Acad Sci USA 84 4355-4358 (1987).

Gribskov, M.; Lüthy, R.; Eisenberg, D. "Profile analysis", Meth Enzymol 183 146-159 (1990).

Kabsch, W.; Sander, C. "Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features", Biopolymers 22 2577-2637 (1983).

Lüthy, R.; McLachlan, A. D.; Eisenberg, D. "Secondary structure-based profiles: Use of structure-conserving scoring tables in searching protein sequence databases for structural similarities", Proteins 10 229-239 (1991).

Lüthy, R.; Bowie, J. U.; Eisenberg, D. "Assessment of protein models with three-dimensional profiles", Nature 356 83-85 (1992).

Press, W. H.; Flannery, B. P.; Teukolsky, S. A.; Vetterling, W. T. Numerical Recipes in C, Cambridge Univ Press: Cambridge (1988).

Richmond, T. J.; Richards, F. M. "Packing of alpha-helices: geometrical constraints and contact areas", J Mol Biol 119 537-555 (1978).

Smith, T. F.; Waterman, M. S. "Comparison of biosequences", Adv Appl Math 2 482-489 (1981).