Index
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
A
- active site
- identifying 11
- Active_Volume 11
- Analyse MCSS
- preparing for 20
- starting 20
C
- computer-aided ligand design 3
- .CRD file 20
D
- DCut 13
- de novo ligand design 4
- Display Groups 20
E
- ETolerance Final 14
- ETolerance Init 14
- Excise Flag 14
F
- FORTRAN programs 41
- functional groups 5, 29
- selecting 14
G
- gather 41
- Groups Menu
- Display Groups 20
H
- Hartree approximation 6
I
- Iteration Profile 14
- Iterations 13
L
- ligand design 3
- development activities 4, 6
M
- MCSS 3, 5-??
- accessing 11
- analyzing results 20-??
- determining energetically favorable positions 5
- importing results files 20
- preparing for 11
- running 19
- setting host 18
- MCSS stand-alone software
- analyzing the results 43
- FORTRAN programs 41
- gather 41
- mcss_exe 41
- rmol 41
- running a job 42
- test case 43
- mcss_exe 41
- mcss_exe command 42
- Multiple Copy Simultaneous Search, see MCSS
N
- Non-bonded cutoff 13
- Num Replicas 13
R
- Random Seed 14
- rmol 41
- RMS 14
- Run_Time 12
S
- Select_For_Job 16
- Setup menu 12
- structure-based ligand design 3
- de novo design 4
- ligand development 4
- synthetic accessibility 5
Last updated December 15, 1998 at 10:30AM Pacific Standard Time.
Copyright © 1998, Molecular Simulations, Inc. All rights
reserved.