[o-info] peptide connectivity

Next message: Alwyn Jones: "[o-info] Q&amp;A connectivity ..."
Previous message: Peter Adrian Meyer: "[o-info] inactivating ncs_mask_edit?"
Next in thread: Joe Krahn: "Re: [o-info] peptide connectivity"
Reply: Joe Krahn: "Re: [o-info] peptide connectivity"
Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]

ksc1130@yahoo.com

Hi All,

I am having some trouble with a peptide ligand bound
to my protein.  It is an 8-residue ligand and one of
the residues is post-translationally modified. 
Because of this, when I load the model into O none of
the residues in the ligand are connected (i.e. no
peptide bonds).  I am wondering how I can tell O to
connect all the residues?  If I do 'make bond' between
them all it is fine at first, but after a round of
refinement the bonds are lost again when I load the
new model.

Thanks in advance!

kc

____________________________________________________________________________________
No need to miss a message. Get email on-the-go 
with Yahoo! Mail for Mobile. Get started.
http://mobile.yahoo.com/mail 
_______________________________________________
o-info mailing list (moderated)
o-info@o-info.bioxray.dk
http://o-info.bioxray.dk/mailman/listinfo/o-info