Dear O-info: Thanks to Mischa Machius for the fix. The error was caused by O trying to write the files to the directory where the osx_ono binary was (wrong permissions) instead of the working directory from which it was started (correct permissions). Creating a symbolic link to osx_ono in my working directory and starting O from the symbolic link rather the traditional alias solved the problem. Alex On Jul 16, 2004, at 2:00 PM, Alex W. Smith wrote: > Dear O-info: > > Has anyone come across this particular error. I have the macro in my > working directory and it seems that all the permission are set > correctly. It appears that the macro can't write the file qq1.pdb. I > am running a TiPB with 10.3.4 if that makes a difference. Any > suggestions would be appreciated. > > Best regards, > Alex > > > > > @reverse_chain.omac > As3> Prompt> Which molecule ? new12 > As2> Prompt> First residue ? 30 > As2> Prompt> Last residue ? 40 > .SYMBOLS T 10 72 > .ID_M NEW12 > .ID_R 30 > .ID_A CA > .ID_Z > REMOL new12 > RES1 30 > RES2 40 > > > > Sam> Coordinate file type assumed from file name is PDB > Sam> 55 atoms written out. > grep: qq1.pdb: No such file or directory > sh: line 1: qq2.pdb: Permission denied > Sam> File type is PDB > Sam> File not found in path: qq2.pdb > Sam> File not found > Sam> Error condition [File does not exist] in lodfil > Sam> Protein junky not in O_db. > Sam> 40 is not a visible command. > Sam> 30 is not a visible command. > Sam> 30 is not a visible command. > Sam> Molecule does not exist. > Sam> Error condition [Molecule not stored in O database] in sammrg > > _______________________________________________ > o-info mailing list (moderated) > o-info@o-info.imsb.au.dk > http://o-info.imsb.au.dk/mailman/listinfo/o-info _______________________________________________ o-info mailing list (moderated) o-info@o-info.imsb.au.dk http://o-info.imsb.au.dk/mailman/listinfo/o-info
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