[o-info] RNA structure refinement

From: Ailong Ke (ailong@groucho.med.jhmi.edu)
Date: Wed Feb 12 2003 - 14:46:09 CST


Dear all,
I am refining a RNA structure and would like to have the help of a RNA
rotamer library. After reading through the A-Z of O web page, I think Lego
command should be of help, am I right? The problem is, when I do the
lego_setup, it never prompts me to load the dgnl_rna.o file, as show in
the example on page 35 of "A-Z of O". And none of the lego commands works
for RNA. Has anybody encountered such problem before? And how did you
solve it? If some of you know other useful tools manipulating RNA
structures, please let me know? Thanks a lot for help!

Ailong Ke, Ph.D.
Department of Molecular Cell Biology
University of Caifornia, Berkeley
Berkeley, CA, 94720

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