Dear O users, I'm modeling a protein with several alfa helices, and sometimes the modeling changes their helical course (oxygen atoms point away and not toward N atoms any more, for instance). I'd like to refine and regularize them in such a way as they keep their helicoidal conformation. Is there a O command (something like "refi helix") to refine an helix and to impose that it maintaines the ideal alfa helix parameters and behaviour? Thanks in advance. Alessandra e-mail address: pesce@sirio.cba.unige.it or pesce@alcor.cba.unige.it
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