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Pumir A, J Graves, R Ranganathan, and BI Shraiman. (2008)  Systems analysis of the single photon response in invertebrate photoreceptors.  PNAS, in press.

Ranganathan, R. (2007) Biochemistry. Signaling across the cell membrane. Science 318(5854):1253-4.

Mishra P, Socolich M, Wall MA, Graves J, Wang Z, Ranganathan R. (2007) Dynamic scaffolding in a G protein-coupled signaling system. Cell 131(1):80-92.

Ferguson AD, Amezcua CA, Halabi NM, Chelliah Y, Rosen MK, Ranganathan R, Deisenhofer J. (2007) Signal transduction pathway of TonB-dependent transporters. PNAS 104(2):513-8.

Poole AM, Ranganathan R. (2006) Knowledge-based potentials in protein design. Curr Opin Struct Biol. 16(4):508-13.

Natarajan M, Lin KM, Hsueh RC, Sternweis PC, Ranganathan R. (2006) A global analysis of cross-talk in a mammalian cellular signalling network. Nat Cell Biol 8(6):571-80.

Russ WP, Lowery DM, Mishra P, Yaffe MB, Ranganathan R. (2005) Natural-like function in artificial WW domains. Nature 437(7058):579-83.

Socolich M, Lockless SW, Russ WP, Lee H, Gardner KH, Ranganathan R. (2005) Evolutionary information for specifying a protein fold. Science 437(7058):512-8.

Shulman AI, Larson C, Mangelsdorf DJ, Ranganathan R. (2004) Structural determinants of allosteric ligand activation in RXR heterodimers. Cell 116(3):417-29.

Jain RK, Ranganathan R. (2004) Local complexity of amino acid interactions in a protein core. PNAS 101(1):111-6.

Hatley ME, Lockless SW, Gibson SK, Gilman AG, Ranganathan R. (2003) Allosteric determinants in guanine nucleotide-binding proteins. PNAS 100(24):14445-50.

Ranganathan R. (2003) Cell biology. A matter of life or death. Science 299(5613):1677-9.

Süel G.M., Lockless S.W., Wall M.A., Ranganathan R. (2003) Evolutionarily conserved networks of residues mediate allosteric communication in proteins. Nature Structual Biology 10:59-69

Russ WP. Ranganathan R. (2002) Knowledge-based potential functions in protein design. Current Opinion in Structual Biology 12:447-52

Wall, M.A., Socolich, M. and Ranganathan, R. (2000) The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Nature Structual Biology 7:1133-8

Kiselev, A., Socolich, M., Vinós J., Hardy R.W., Zuker C.S., and Ranganathan, R. (2000) A Molecular Pathway for Light-Dependent Photoreceptor Apoptosis in Drosophila. Neuron 28: 139-52

Lockless, S. W. and R. Ranganathan (1999) Evolutionarily conserved pathways of energetic connectivity in protein families. Science 286: 295-9

Zuker, C. and Ranganathan, R. (1999) Signal Transduction: The Pathway to SpecificityScience 283: 650-1

Ranganathan, R. and E.M. Ross. (1997) Signaling Complexes and PDZ Domains. Current Biology 7: R770-3

Ranganathan, R., K.P. Lu, T. Hunter, J.P. Noel. (1997) Structural and Functional Analysis of the Mitotic Rotamase Pin1 Suggests Substrate Recognition Is Phosphorylation Dependent. Cell 89: 875-86

Ranganathan, R., J.H. Lewis, R. MacKinnon. (1996) Spatial Localization of the K+ Channel Selectivity Filter By Mutant Cycle-Based Structure Analysis. Neuron 16: 131-9

Ranganathan, R. and C. F. Stevens (1995) Arrestin binding determines the rate of inactivation of the G protein- coupled receptor rhodopsin in vivo. Cell 81: 841-8

Ranganathan, R., D. M. Malicki, et al. (1995) Signal transduction in Drosophila photoreceptors. Annu Rev Neurosci 18: 283-317

Ranganathan, R., B. J. Bacskai, et al. (1994) Cytosolic calcium transients: spatial localization and role in Drosophila photoreceptor cell function. Neuron 13: 837-48

Ranganathan, R., G. L. Harris, et al. (1991) A Drosophila mutant defective in extracellular calcium-dependent photoreceptor deactivation and rapid desensitization. Nature 354: 230-2

Ranganathan, R., W. A. Harris, et al. (1991) The molecular genetics of invertebrate phototransduction. Trends Neurosci 14: 486-93

Smith, D. P., R. Ranganathan, et al. (1991) Photoreceptor deactivation and retinal degeneration mediated by a photoreceptor-specific protein kinase C. Science 254: 1478-84